{
  "schema": "lgasieve.reconstructed-source-manifest.v1",
  "retrieved_local_date": "2026-07-31",
  "source": {
    "provider": "Dropbox",
    "authenticated_folder": "https://www.dropbox.com/home/Yang%20Shao/Personal/Codexhome/Bioinformatics/lgasieve"
  },
  "claims_boundary": [
    "Archives are preserved byte-for-byte; extracted working files may contain documented research changes.",
    "The top-level README, LICENSE, and prior audit-report downloads were not required to reconstruct the executable package and were not included in this manifest.",
    "The reference directory was restored as a byte-for-byte copy of reference_grch37 because the tests expect the legacy path name."
  ],
  "archives": [
    {
      "name": "exomedepth_development_v2.zip",
      "bytes": 401811,
      "sha256": "527eb7cebfa811fc02cc1cf09ddf1742eedcd7b40e2f9fbdfe3d235986b35852"
    },
    {
      "name": "lgasieve.zip",
      "bytes": 1226467,
      "sha256": "98c3caacd3a1eaf5b95d13829379e8b2f2623073cd24a2b898ab5e2b69f4b554"
    },
    {
      "name": "reference_grch37.zip",
      "bytes": 214274,
      "sha256": "2665e9fb40e1f3ffc98ed851665639f6dd08cfe241adb05e62bc600d87aec773"
    },
    {
      "name": "scripts.zip",
      "bytes": 363439,
      "sha256": "d7629a71e455c8adf097d406880ef22a49b17cb695023c22182814e27c2b23cb"
    },
    {
      "name": "tests.zip",
      "bytes": 821210,
      "sha256": "080a7d228473626b3498f9ac662b9f993b2b570493c571260a1c0e20dd1f9c32"
    },
    {
      "name": "validation_corrected.zip",
      "bytes": 3667430,
      "sha256": "653a8aec481580ba4de8e229cc2339476c607599309825e67a30ef0bd14cd66a"
    },
    {
      "name": "validation_v2.zip",
      "bytes": 422371,
      "sha256": "711e32c7937ec947c1fedd358bade94f9a03b8a24a4781e341a007d2a3df28f7"
    }
  ],
  "key_inputs": [
    {
      "path": "work/exomedepth_development_v2/fragment_counts.tsv",
      "sha256": "4c411785e92d17d7750e46b41b54cdcc6ce86a5cefcf24612b76639ed74fdbd0"
    },
    {
      "path": "reference_grch37/panel.json",
      "sha256": "b25174bbff260daf39b94ee3d61fcb5ad51f884853add94761012ea4523c89b8"
    },
    {
      "path": "validation_v2/revalidation_summary.json",
      "sha256": "ba33139b0751ae252745b6197ea701c8abcb61b9e56555bd6456fab80463b63f"
    },
    {
      "path": "pyproject.toml",
      "sha256": "5b51a4ebdb5ce4de0f1b7dc5355086c6e74c533b54afd6d7707d28d235ab3a80"
    }
  ],
  "baseline_reproduction": {
    "command": "python -m pytest -q",
    "result_before_method_changes": "107 passed, 3 skipped, 7 subtests",
    "python": "3.14.6",
    "numpy": "2.5.1",
    "scipy": "1.18.0",
    "scikit_learn": "1.9.0",
    "pytest": "9.1.1"
  }
}
